Current Status and Perspectives for the Estimation of Crop Water Requirements from Earth Observation

This paper presents an overview of current techniques and recent developments in the application of Earth Observation data for assessing crop water requirements. During recent years there has been much progress in understanding land surface-atmosphere processes and their parameterisation in the management of land and water resources. This knowledge can be combined with the potentiality of Earth Observation techniques from space, which are able to provide detailed information for monitoring agricultural systems. As today, two main developments in the field of Earth Observation data acquisition and analysis have occurred: a) availability of new generations of sensors, with enhanced spectral and spatial resolution; b) detailed knowledge of the processes that determine the response of land surface as detected from remote sensors in different regions of the electromagnetic spectrum. These advancements have made possible a "quantitative" approach in the interpretation of Earth Observation data, ready for being transferred to operative applications i.e. for irrigation scheduling and water management. This paper presents a review of current applications of optical data in the visible and near infrared spectral regions, with particular emphasis to the experiences developed by the author within AQUATER and other research projects project

Optimal Exploitation of the Sentinel-2 Spectral Capabilities for Crop Leaf Area Index Mapping

The continuously increasing demand of accurate quantitative high quality information on land surface properties will be faced by a new generation of environmental Earth observation (EO) missions. One current example, associated with a high potential to contribute to those demands, is the multi-spectral ESA Sentinel-2 (S2) system. The present study focuses on the evaluation of spectral information content needed for crop leaf area index (LAI) mapping in view of the future sensors. Data from a field campaign were used to determine the optimal spectral sampling from available S2 bands applying inversion of a radiative transfer model (PROSAIL) with look-up table (LUT) and artificial neural network (ANN) approaches. Overall LAI estimation performance of the proposed LUT approach (LUTN₅₀) was comparable in terms of retrieval performances with a tested and approved ANN method. Employing seven- and eight-band combinations, the LUTN₅₀ approach obtained LAI RMSE of 0.53 and normalized LAI RMSE of 0.12, which was comparable to the results of the ANN. However, the LUTN50 method showed a higher robustness and insensitivity to different band settings. Most frequently selected wavebands were located in near infrared and red edge spectral regions. In conclusion, our results emphasize the potential benefits of the Sentinel-2 mission for agricultural applications

Estimation of Leaf Area Index Using DEIMOS-1 Data: Application and Transferability of a Semi-Empirical Relationship between two Agricultural Areas

This work evaluates different procedures for the application of a semi-empirical model to derive time-series of Leaf Area Index (LAI) maps in operation frameworks. For demonstration, multi-temporal observations of DEIMOS-1 satellite sensor data were used. The datasets were acquired during the 2012 growing season over two agricultural regions in Southern Italy and Eastern Austria (eight and five multi-temporal acquisitions, respectively). Contemporaneous field estimates of LAI (74 and 55 measurements, respectively) were collected using an indirect method (LAI-2000) over a range of LAI values and crop types. The atmospherically corrected reflectance in red and near-infrared spectral bands was used to calculate the Weighted Difference Vegetation Index (WDVI) and to establish a relationship between LAI and WDVI based on the CLAIR model. Bootstrapping approaches were used to validate the models and to calculate the Root Mean Square Error (RMSE) and the coefficient of determination (R2) between measured and predicted LAI, as well as corresponding confidence intervals. The most suitable approach, which at the same time had the minimum requirements for fieldwork, resulted in a RMSE of 0.407 and R2 of 0.88 for Italy and a RMSE of 0.86 and R2 of 0.64 for the Austrian test site. Considering this procedure, we also evaluated the transferability of the local CLAIR model parameters between the two test sites observing no significant decrease in estimation accuracies. Additionally, we investigated two other statistical methods to estimate LAI based on: (a) Support Vector Machine (SVM) and (b) Random Forest (RF) regressions. Though the accuracy was comparable to the CLAIR model for each test site, we observed severe limitations in the transferability of these statistical methods between test sites with an increase in RMSE up to 24.5% for RF and 38.9% for SVM

Water Pricing in Agriculture following the Water Framework Directive: A Systematic Review of the Literature

In October 2000, the Water Framework Directive (WFD) established a common framework for water management in Europe, thereby substantially reforming European water legislation. The Directive encourages the use of  economic instruments, including water pricing, to ensure water resource management and conservation. The aim of this systematic review was to establish the state of academic research on water pricing in connection with the WFD within the agriculture sector. It emerges that the issue of water pricing is very broad, site-specific and mostly, it faces multidisciplinary issues. Researchers should cross their conventional boundaries of investigation, trying to cut edges. While the Directive advocate for a larger implementation of economic instruments such as pricing, it seems that the large contribution from the economists is yet to come

Estimation of evapotranspiration and crop coefficients of tendone vineyards using multi-sensor remote sensing data in a mediterranean environment

The sustainable management of water resources plays a key role in Mediterranean viticulture, characterized by scarcity and competition of available water. This study focuses on estimating the evapotranspiration and crop coefficients of table grapes vineyards trained on overhead "tendone" systems in the Apulia region (Italy). Maximum vineyard transpiration was estimated by adopting the "direct" methodology for ETp proposed by the Food and Agriculture Organization in Irrigation and Drainage Paper No. 56, with crop parameters estimated from Landsat 8 and RapidEye satellite data in combination with ground-based meteorological data. The modeling results of two growing seasons (2013 and 2014) indicated that canopy growth, seasonal and 10-day sums evapotranspiration values were strictly related to thermal requirements and rainfall events. The estimated values of mean seasonal daily evapotranspiration ranged between 4.2 and 4.1 mm·d-1, while midseason estimated values of crop coefficients ranged from 0.88 to 0.93 in 2013, and 1.02 to 1.04 in 2014, respectively. The experimental evapotranspiration values calculated represent the maximum value in absence of stress, so the resulting crop coefficients should be used with some caution. It is concluded that the retrieval of crop parameters and evapotranspiration derived from remotely-sensed data could be helpful for downscaling to the field the local weather conditions and agronomic practices and thus may be the basis for supporting grape growers and irrigation managers

Evaluation of the PROSAIL Model Capabilities for Future Hyperspectral Model Environments: A Review Study

Upcoming satellite hyperspectral sensors require powerful and robust methodologies for making optimum use of the rich spectral data. This paper reviews the widely applied coupled PROSPECT and SAIL radiative transfer models (PROSAIL), regarding their suitability for the retrieval of biophysical and biochemical variables in the context of agricultural crop monitoring. Evaluation was carried out using a systematic literature review of 281 scientific publications with regard to their (i) spectral exploitation, (ii) vegetation type analyzed, (iii) variables retrieved, and (iv) choice of retrieval methods. From the analysis, current trends were derived, and problems identified and discussed. Our analysis clearly shows that the PROSAIL model is well suited for the analysis of imaging spectrometer data from future satellite missions and that the model should be integrated in appropriate software tools that are being developed in this context for agricultural applications. The review supports the decision of potential users to employ PROSAIL for their specific data analysis and provides guidelines for choosing between the diverse retrieval techniques

Capability of Sentinel-2 data for estimating maximum evapotranspiration and irrigation requirements for tomato crop in Central Italy

Abstract The occurrence of water shortages ascribed to projected climate change, especially in the Mediterranean region, fosters the interest in remote sensing (RS) applications to optimize water use in agriculture. Remote sensing evapotranspiration and water demand estimation over large cultivated areas were used to manage irrigation to minimize losses during the crop growing cycle. The research aimed to explore the potential of the MultiSpectral Instrument (MSI) sensor on board Sentinel-2A to estimate crop parameters, mainly surface albedo (α) and Leaf Area Index (LAI) that influence the dynamics of potential evapotranspiration (ETp) and Irrigation Water Requirements (IWR) of processing tomato crop (Solanum lycopersicum L.). Maximum tomato ETp was calculated according to the FAO Penman-Monteith equation (FAO-56 PM) using appropriate values of canopy parameters derived by processing Sentinel-2A data in combination with daily weather information. For comparison, we used the actual crop evapotranspiration (ETa) derived from the soil water balance (SWB) module in the Environmental Policy Integrated Climate (EPIC) model and calibrated with in-situ Root Zone Soil Moisture (RZSM). The experiment was set up in a privately-owned farm located in the Tarquinia irrigation district (Central Italy) during two growing seasons, within the framework of the EU Project FATIMA (FArming Tools for external nutrient Inputs and water Management). The results showed that canopy growth, maximum evapotranspiration (ETp) and IWR were accurately inferred from satellite observations following seasonal rainfall and air temperature patterns. The net estimated IWR from satellite observations for the two-growing seasons was about 272 and 338 mm in 2016 and 2017, respectively. Such estimated requirement was lower compared with the actual amount supplied by the farmer with sprinkler and drip micro-irrigation system in both growing seasons resulting in 364 (276 mm drip micro-irrigation, and 88 mm sprinkler) and 662 (574 mm drip micro-irrigation, and 88 mm sprinkler) mm, respectively. Our findings indicated the suitability of Sentinel-2A to predict tomato water demand at field level, providing useful information for optimizing the irrigation over extended farmland

Identification of Altered miRNAs in Cerumen of Dogs Affected by Otitis Externa

Otitis externa is one of the most common diseases in dogs. It is associated with bacteria and yeast, which are regarded as secondary causes. Cerumen is a biological substance playing an important role in the protection of ear skin. The involvement of cerumen in immune defense is poorly understood. MicroRNAs can modulate the host immune response and can provide promising biomarkers for several inflammatory and infectious disorder diagnosis. The aims of this study were to profile the cerumen miRNA signature associated with otitis externa in dogs, integrate miRNAs to their target genes related to immune functions, and investigate their potential use as biomarkers. Cerumen was collected from healthy and otitis affected dogs and the expression of miRNAs was profiled by Next Generation Sequencing; the validation of the altered miRNAs was performed using RT-qPCR. The potential ability of miRNAs to modulate immune-related genes was investigated using bioinformatics tools. The results pointed out that 32 miRNAs, of which 14 were up- and 18 down-regulated, were differentially expressed in healthy vs. otitis-affected dogs. These results were verified by RT-qPCR. To assess the diagnostic value of miRNAs, ROC analysis was carried out, highlighting that 4 miRNAs are potential biomarkers to discriminate otitis-affected dogs. Bioinformatics showed that cerumen miRNAs may be involved in the modulation of host immune response. In conclusion, we have demonstrated for the first time that miRNAs can be efficiently extracted and quantified from cerumen, that their profile changes between healthy and otitis affected dogs, and that they may serve as potential biomarkers. Further studies are necessary to confirm their diagnostic value and to investigate their interaction with immune-related genes

Chronic constipation diagnosis and treatment evaluation: The "CHRO.CO.DI.T.E." study

Background: According to Rome criteria, chronic constipation (CC) includes functional constipation (FC) and irritable bowel syndrome with constipation (IBS-C). Some patients do not meet these criteria (No Rome Constipation, NRC). The aim of the study was is to evaluate the various clinical presentation and management of FC, IBS-C and NRC in Italy. Methods: During a 2-month period, 52 Italian gastroenterologists recorded clinical data of FC, IBS-C and NRC patients, using Bristol scale, PAC-SYM and PAC-QoL questionnaires. In addition, gastroenterologists were also asked to record whether the patients were clinically assessed for CC for the first time or were in follow up. Diagnostic tests and prescribed therapies were also recorded. Results: Eight hundred seventy-eight consecutive CC patients (706 F) were enrolled (FC 62.5%, IBS-C 31.3%, NRC 6.2%). PAC-SYM and PAC-QoL scores were higher in IBS-C than in FC and NRC. 49.5% were at their first gastroenterological evaluation for CC. In 48.5% CC duration was longer than 10 years. A specialist consultation was requested in 31.6%, more frequently in IBS-C than in NRC. Digital rectal examination was performed in only 56.4%. Diagnostic tests were prescribed to 80.0%. Faecal calprotectin, thyroid tests, celiac serology, breath tests were more frequently suggested in IBS-C and anorectal manometry in FC. More than 90% had at least one treatment suggested on chronic constipation, most frequently dietary changes, macrogol and fibers. Antispasmodics and psychotherapy were more frequently prescribed in IBS-C, prucalopride and pelvic floor rehabilitation in FC. Conclusions: Patients with IBS-C reported more severe symptoms and worse quality of life than FC and NRC. Digital rectal examination was often not performed but at least one diagnostic test was prescribed to most patients. Colonoscopy and blood tests were the "first line" diagnostic tools. Macrogol was the most prescribed laxative, and prucalopride and pelvic floor rehabilitation represented a "second line" approach. Diagnostic tests and prescribed therapies increased by increasing CC severity